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The Nocardia farcinica IFM 10152 genome is 6.29 Million bp long and contains approximately 6000
predicted genes.
The sequence was released 10/07/2004 by the Department of Bioactive Molecules, National Institute of Infectious Diseases, and was described
in Proc Natl Acad Sci U S A :14925-30 (2004) Ishikawa J, Yamashita A, Mikami Y, Hoshino Y, Kurita H, et al. "The complete genomic sequence of Nocardia farcinica IFM 10152.
"
Abstract: We determined the genomic sequence of Nocardia farcinica IFM 10152, a clinical isolate, and revealed the molecular basis of its versatility. The genome consists of a single circular chromosome of 6,021,225 bp with an average G+C content of 70.8% and two plasmids of 184,027 (pNF1) and 87,093 (pNF2) bp with average G+C contents of 67.2% and 68.4%, respectively. The chromosome encoded 5,674 putative protein-coding sequences, including many candidate genes for virulence and multidrug... [Click above reference link for full abstract]
Taxonomy: Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Nocardiaceae; Nocardia.
Sequenced related species/strains: Corynebacterium diphtheriae NCTC 13129, Corynebacterium efficiens YS-314, Corynebacterium glutamicum ATCC 13032, Corynebacterium glutamicum ATCC 13032, Corynebacterium glutamicum ATCC 13032, Corynebacterium glutamicum R, Corynebacterium jeikeium K411, Mycobacterium sp. JLS, Mycobacterium sp. KMS, Mycobacterium sp. MCS, Mycobacterium avium 104, Mycobacterium avium subsp. paratuberculosis K-10, Mycobacterium bovis AF2122-97, Mycobacterium bovis BCG str. Pasteur 1173P2, Mycobacterium gilvum PYR-GCK, Mycobacterium leprae TN, Mycobacterium smegmatis str. MC2 155, Mycobacterium tuberculosis CDC1551, Mycobacterium tuberculosis H37Ra, Mycobacterium tuberculosis H37Rv, Mycobacterium ulcerans Agy99, Mycobacterium vanbaalenii PYR-1, Rhodococcus sp. RHA1
Sample position queries
A genome position can be specified by chromosomal coordinate range, COG
ID, or keywords from the GenBank or TIGR description of a gene.
The available chromosome/plasmid names are:
The following list shows examples of valid position queries for this
genome:
| Request: | Genome Browser Response: |
|---|
| chr | Displays the entire sequence "chr" in the browser window |
| chr:1-10000 | Displays first ten thousand bases of the sequence "chr" |
| transporter | Lists all genes with "transporter" in the name or description |
| nfa100 | Display genome at position of gene nfa100 |
Credits
The Archaeal Genome Browsers at UCSC were developed by members of the
Lowe Lab (Kevin Schneider,
Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support from
the UCSC Human Genome
Browser group.
The Archaeal Browsers are run by a slightly modified
version of the UCSC Human Genome
Browser system. All queries, bug reports, content corrections, suggested improvements,
and new track data submissions should be sent to Todd Lowe (lowe
@soe.ucsc.edu).
If you use the browser in your published research, please cite our
publication in the Nucleic Acids Research Database
Issue. Citations and positive feedback will help us obtain funding
to continue development of this community resource.
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