Lawsonia intracellularis PHE MN1-00 (Lawsonia intracellularis PHE/MN1-00) Genome Browser Gateway

Lawsonia intracellularis PHE MN1-00 (Lawsonia intracellularis PHE/MN1-00) Genome Browser Gateway

The UCSC Genome Browser was created by the Genome Bioinformatics Group of UC Santa Cruz.
Software Copyright (c) The Regents of the University of California. All rights reserved.

clade	genome	assembly	position or search term	image width

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About the Lawsonia intracellularis PHE MN1-00 05/05/2006 (lawsIntr_PHE_MN1_00) assembly (sequences)

The current draft of the Lawsonia intracellularis PHE-MN1-00 genome is 1.72 Million bp long.

The most recent genome sequence draft was released 05/05/2006 by the University of Minnesota, but there is no associated genome publication to date.

Taxonomy: Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Lawsonia.

Sequenced related species/strains: Desulfovibrio desulfuricans G20, Desulfovibrio vulgaris subsp. vulgaris DP4, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Sample position queries

A genome position can be specified by chromosomal coordinate range, COG ID, or keywords from the GenBank or TIGR description of a gene. The available chromosome/plasmid names are:

Browser Chrom/Plasmid Name Length (bp) GC Content (%) Gene Count NCBI RefSeq Accession

chr 1457619 33.28 1231 NC_008011

plasmid_1 27048 29.05 29 NC_008012

plasmid_2 39794 29.23 24 NC_008013

plasmid_3 194553 32.91 104 NC_008014

The following list shows examples of valid position queries for this genome:

Request: Genome Browser Response:

chr Displays the entire sequence "chr" in the browser window

chr:1-10000 Displays first ten thousand bases of the sequence "chr"

transporter Lists all genes with "transporter" in the name or description

LI0010 Display genome at position of gene LI0010

Credits

The Archaeal Genome Browsers at UCSC were developed by members of the Lowe Lab (Kevin Schneider, Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support from the UCSC Human Genome Browser group. The Archaeal Browsers are run by a slightly modified version of the UCSC Human Genome Browser system. All queries, bug reports, content corrections, suggested improvements, and new track data submissions should be sent to Todd Lowe (lowe @soe.ucsc.edu).

If you use the browser in your published research, please cite our publication in the Nucleic Acids Research Database Issue. Citations and positive feedback will help us obtain funding to continue development of this community resource.