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The Oceanobacillus iheyensis HTE831 genome is 3.63 Million bp long and contains approximately 3594
predicted genes.
The sequence was released 12/26/2001 by the Japan MSTC, and was described
in Nucleic Acids Res :3927-35 (2002) Takami H, Takaki Y, Uchiyama I, "Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments.
"
Abstract: Oceanobacillus iheyensis HTE831 is an alkaliphilic and extremely halotolerant Bacillus-related species isolated from deep-sea sediment. We present here the complete genome sequence of HTE831 along with analyses of genes required for adaptation to highly alkaline and saline environments. The genome consists of 3.6 Mb, encoding many proteins potentially associated with roles in regulation of intracellular osmotic pressure and pH homeostasis. The candidate genes involved in alkaliphily... [Click above reference link for full abstract]
Taxonomy: Bacteria; Firmicutes; Bacillales; Bacillaceae; Oceanobacillus.
Sequenced related species/strains: Bacillus anthracis str. A2012, Bacillus anthracis str. Ames, Bacillus anthracis str. 'Ames Ancestor', Bacillus anthracis str. Sterne, Bacillus cereus ATCC 14579, Bacillus cereus ATCC 10987, Bacillus cereus E33L, Bacillus clausii KSM-K16, Bacillus halodurans C-125, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus subtilis subsp. subtilis str. 168, Bacillus thuringiensis str. Al Hakam, Bacillus thuringiensis serovar konkukian str. 97-27, Geobacillus kaustophilus HTA426, Geobacillus thermodenitrificans NG80-2, Listeria innocua Clip11262, Listeria monocytogenes EGD-e, Listeria monocytogenes str. 4b F2365, Listeria welshimeri serovar 6b str. SLCC5334, Staphylococcus aureus subsp. aureus COL, Staphylococcus aureus subsp. aureus JH9, Staphylococcus aureus subsp. aureus MW2, Staphylococcus aureus subsp. aureus Mu50, Staphylococcus aureus subsp. aureus N315, Staphylococcus aureus subsp. aureus NCTC 8325, Staphylococcus aureus RF122, Staphylococcus aureus subsp. aureus USA300, Staphylococcus aureus subsp. aureus MRSA252, Staphylococcus aureus subsp. aureus MSSA476, Staphylococcus epidermidis ATCC 12228, Staphylococcus epidermidis RP62A, Staphylococcus haemolyticus JCSC1435, Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
Sample position queries
A genome position can be specified by chromosomal coordinate range, COG
ID, or keywords from the GenBank or TIGR description of a gene.
The available chromosome/plasmid names are:
| Browser Chrom/Plasmid Name | Length (bp) | GC Content (%) | Gene Count | NCBI RefSeq Accession |
|---|
| chr | 3630528 | 35.68 | 3594 | NC_004193 |
The following list shows examples of valid position queries for this
genome:
| Request: | Genome Browser Response: |
|---|
| chr | Displays the entire sequence "chr" in the browser window |
| chr:1-10000 | Displays first ten thousand bases of the sequence "chr" |
| transporter | Lists all genes with "transporter" in the name or description |
| OB0010 | Display genome at position of gene OB0010 |
Credits
The Archaeal Genome Browsers at UCSC were developed by members of the
Lowe Lab (Kevin Schneider,
Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support from
the UCSC Human Genome
Browser group.
The Archaeal Browsers are run by a slightly modified
version of the UCSC Human Genome
Browser system. All queries, bug reports, content corrections, suggested improvements,
and new track data submissions should be sent to Todd Lowe (lowe
@soe.ucsc.edu).
If you use the browser in your published research, please cite our
publication in the Nucleic Acids Research Database
Issue. Citations and positive feedback will help us obtain funding
to continue development of this community resource.
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