Abstract: Salmonella enterica serovars often have a broad host range, and some cause both gastrointestinal and systemic disease. But the serovars Paratyphi A and Typhi are restricted to humans and cause only systemic disease. It has been estimated that Typhi arose in the last few thousand years. The sequence and microarray analysis of the Paratyphi A genome indicates that it is similar to the Typhi genome but suggests that it has a more recent evolutionary origin. Both genomes have independently... [Click above reference link for full abstract]

Taxonomy: 9150 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;

Sequenced related species/strains: Acidovorax sp. JS42, Acidovorax avenae subsp. citrulli AAC00-1, Acidiphilium cryptum JF-5, Acinetobacter baumannii ATCC 17978, Acinetobacter sp. ADP1, Actinobacillus pleuropneumoniae L20, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas salmonicida subsp. salmonicida A449, Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58, Alcanivorax borkumensis SK2, Alkalilimnicola ehrlichei MLHE-1, Anaeromyxobacter dehalogenans 2CP-C, Anaplasma marginale str. St. Maries, Anaplasma phagocytophilum HZ, Azoarcus sp. BH72, Azoarcus sp. EbN1, Azorhizobium caulinodans ORS571, Bartonella bacilliformis KC583, Bartonella henselae str. Houston-1, Bartonella quintana str. Toulouse, Baumannia cicadellinicola str. Hc (Homalodisca coagulata), Bdellovibrio bacteriovorus HD100, Candidatus Blochmannia floridanus, Bordetella bronchiseptica RB50, Bordetella parapertussis 12822, Bordetella pertussis Tohama I, Bradyrhizobium sp. BTAi1, Bradyrhizobium sp. ORS278, Bradyrhizobium japonicum USDA 110, Brucella abortus biovar 1 str. 9-941, Brucella melitensis 16M, Brucella melitensis biovar Abortus 2308, Brucella ovis ATCC 25840, Brucella suis 1330, Buchnera aphidicola str. Bp (Baizongia pistaciae), Buchnera aphidicola str. Cc (Cinara cedri), Buchnera aphidicola str. Sg (Schizaphis graminum), Buchnera aphidicola str. APS (Acyrthosiphon pisum), Burkholderia sp. 383, Burkholderia cenocepacia AU 1054, Burkholderia cenocepacia HI2424, Burkholderia cepacia AMMD, Burkholderia mallei ATCC 23344, Burkholderia mallei NCTC 10229, Burkholderia mallei NCTC 10247, Burkholderia mallei SAVP1, Burkholderia pseudomallei 1106a, Burkholderia pseudomallei 1710b, Burkholderia pseudomallei 668, Burkholderia pseudomallei K96243, Burkholderia thailandensis E264, Burkholderia vietnamiensis G4, Burkholderia xenovorans LB400, Campylobacter fetus subsp. fetus 82-40, Campylobacter jejuni subsp. jejuni NCTC 11168, Campylobacter jejuni subsp. jejuni 81-176, Campylobacter jejuni RM1221, Candidatus Blochmannia floridanus, Candidatus Blochmannia pennsylvanicus str. BPEN, Candidatus Carsonella ruddii PV, Candidatus Carsonella ruddii PV, Candidatus Pelagibacter ubique HTCC1062, Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Vesicomyosocius okutanii HA, Caulobacter crescentus CB15, Chromohalobacter salexigens DSM 3043, Chromobacterium violaceum ATCC 12472, Colwellia psychrerythraea 34H, Coxiella burnetii RSA 493, Dechloromonas aromatica RCB, Desulfovibrio desulfuricans G20, Desulfotalea psychrophila LSv54, Desulfovibrio vulgaris subsp. vulgaris DP4, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, Dichelobacter nodosus VCS1703A, Ehrlichia canis str. Jake, Ehrlichia chaffeensis str. Arkansas, Ehrlichia ruminantium str. Gardel, Ehrlichia ruminantium str. Welgevonden, Ehrlichia ruminantium str. Welgevonden, Enterobacter sp. 638, Erwinia carotovora subsp. atroseptica SCRI1043, Erythrobacter litoralis HTCC2594, Escherichia coli 536, Escherichia coli APEC O1, Escherichia coli CFT073, Escherichia coli K12, Escherichia coli O157:H7 str. Sakai, Escherichia coli O157:H7 EDL933, Escherichia coli UTI89, Escherichia coli W3110, Francisella tularensis subsp. tularensis FSC198, Francisella tularensis subsp. tularensis WY96-3418, Francisella tularensis subsp. holarctica, Francisella tularensis subsp. holarctica OSU18, Francisella tularensis subsp. novicida U112, Francisella tularensis subsp. tularensis SCHU S4, Geobacter metallireducens GS-15, Geobacter sulfurreducens PCA, Geobacter uraniumreducens Rf4, Gluconobacter oxydans 621H, Granulibacter bethesdensis CGDNIH1, Haemophilus ducreyi 35000HP, Haemophilus influenzae Rd KW20, Haemophilus influenzae 86-028NP, Haemophilus somnus 129PT, Hahella chejuensis KCTC 2396, Halorhodospira halophila SL1, Helicobacter acinonychis str. Sheeba, Helicobacter hepaticus ATCC 51449, Helicobacter pylori 26695, Helicobacter pylori G27, Helicobacter pylori HPAG1, Helicobacter pylori J99, Herminiimonas arsenicoxydans, Hyphomonas neptunium ATCC 15444, Idiomarina loihiensis L2TR, Jannaschia sp. CCS1, Lawsonia intracellularis PHE-MN1-00, Legionella pneumophila str. Corby, Legionella pneumophila str. Lens, Legionella pneumophila str. Paris, Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Magnetococcus sp. MC-1, Magnetospirillum magneticum AMB-1, Mannheimia succiniciproducens MBEL55E, Marinobacter aquaeolei VT8, Maricaulis maris MCS10, Mesorhizobium sp. BNC1, Mesorhizobium loti MAFF303099, Methylococcus capsulatus str. Bath, Methylobacillus flagellatus KT, Methylibium petroleiphilum PM1, Myxococcus xanthus DK 1622, Neisseria gonorrhoeae FA 1090, Neisseria meningitidis FAM18, Neisseria meningitidis MC58, Neisseria meningitidis Z2491, Neorickettsia sennetsu str. Miyayama, Nitrosomonas europaea ATCC 19718, Nitrosomonas eutropha C91, Nitrobacter hamburgensis X14, Nitrosospira multiformis ATCC 25196, Nitrosococcus oceani ATCC 19707, Nitrobacter winogradskyi Nb-255, Novosphingobium aromaticivorans DSM 12444, Orientia tsutsugamushi Boryong, Paracoccus denitrificans PD1222, Pasteurella multocida subsp. multocida str. Pm70, Pelobacter carbinolicus DSM 2380, Pelobacter propionicus DSM 2379, Photorhabdus luminescens subsp. laumondii TTO1, Photobacterium profundum SS9, Polaromonas sp. JS666, Polaromonas naphthalenivorans CJ2, Polynucleobacter sp. QLW-P1DMWA-1, Pseudomonas aeruginosa PAO1, Pseudomonas aeruginosa UCBPP-PA14, Pseudoalteromonas atlantica T6c, Pseudomonas entomophila L48, Pseudomonas fluorescens Pf-5, Pseudomonas fluorescens PfO-1, Pseudoalteromonas haloplanktis TAC125, Pseudomonas mendocina ymp, Pseudomonas putida F1, Pseudomonas putida KT2440, Pseudomonas stutzeri A1501, Pseudomonas syringae pv. phaseolicola 1448A, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. tomato str. DC3000, Psychrobacter sp. PRwf-1, Psychrobacter arcticus 273-4, Psychrobacter cryohalolentis K5, Psychromonas ingrahamii 37, Ralstonia eutropha H16, Ralstonia eutropha JMP134, Ralstonia metallidurans CH34, Ralstonia solanacearum GMI1000, Rhizobium etli CFN 42, Rhizobium leguminosarum bv. viciae 3841, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodopseudomonas palustris BisA53, Rhodopseudomonas palustris BisB18, Rhodopseudomonas palustris BisB5, Rhodopseudomonas palustris CGA009, Rhodopseudomonas palustris HaA2, Rhodospirillum rubrum ATCC 11170, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17025, Rhodobacter sphaeroides ATCC 17029, Rickettsia bellii RML369-C, Rickettsia conorii str. Malish 7, Rickettsia felis URRWXCal2, Rickettsia prowazekii str. Madrid E, Rickettsia typhi str. Wilmington, Roseobacter denitrificans OCh 114, Saccharophagus degradans 2-40, Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhi Ty2, Shewanella sp. ANA-3, Shewanella sp. MR-4, Shewanella sp. MR-7, Shewanella sp. W3-18-1, Shewanella amazonensis SB2B, Shewanella baltica OS155, Shewanella denitrificans OS217, Shewanella frigidimarina NCIMB 400, Shewanella loihica PV-4, Shewanella oneidensis MR-1, Shewanella putrefaciens CN-32, Shigella boydii Sb227, Shigella dysenteriae Sd197, Shigella flexneri 2a str. 301, Shigella flexneri 2a str. 2457T, Shigella flexneri 5 str. 8401, Shigella sonnei Ss046, Silicibacter sp. TM1040, Silicibacter pomeroyi DSS-3, Sinorhizobium meliloti 1021, Sodalis glossinidius str. 'morsitans', Sphingopyxis alaskensis RB2256, Sphingomonas wittichii RW1, Syntrophus aciditrophicus SB, Syntrophobacter fumaroxidans MPOB, Thiomicrospira crunogena XCL-2, Thiobacillus denitrificans ATCC 25259, Thiomicrospira denitrificans ATCC 33889, Verminephrobacter eiseniae EF01-2, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae MO10, Vibrio cholerae O395, Vibrio fischeri ES114, Vibrio parahaemolyticus RIMD 2210633, Vibrio vulnificus CMCP6, Vibrio vulnificus YJ016, Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis, Wolbachia endosymbiont strain TRS of Brugia malayi, Wolbachia endosymbiont of Drosophila melanogaster, Wolinella succinogenes DSM 1740, Xanthomonas campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. 8004, Xanthomonas campestris pv. vesicatoria str. 85-10, Xanthomonas axonopodis pv. citri str. 306, Xanthomonas oryzae pv. oryzae KACC10331, Xanthomonas oryzae pv. oryzae MAFF 311018, Xylella fastidiosa 9a5c, Xylella fastidiosa Temecula1, Yersinia enterocolitica subsp. enterocolitica 8081, Yersinia pestis Antiqua, Yersinia pestis CO92, Yersinia pestis KIM, Yersinia pestis Nepal516, Yersinia pestis Pestoides F, Yersinia pestis biovar Microtus str. 91001, Yersinia pseudotuberculosis IP 32953, Zymomonas mobilis subsp. mobilis ZM4

Sample position queries

A genome position can be specified by chromosomal coordinate range, COG ID, or keywords from the GenBank or TIGR description of a gene. The available chromosome/plasmid names are:

Browser Chrom/Plasmid Name	Length (bp)	GC Content (%)	Gene Count	NCBI RefSeq Accession
chr	4585229	52.16	4403	NC_006511

The following list shows examples of valid position queries for this genome: 

Request:	Genome Browser Response:
chr	Displays the entire sequence "chr" in the browser window
chr:1-10000	Displays first ten thousand bases of the sequence "chr"
transporter	Lists all genes with "transporter" in the name or description
SPA0011	Display genome at position of gene SPA0011

Credits

If you use the browser in your published research, please cite our publication in the Nucleic Acids Research Database Issue. Citations and positive feedback will help us obtain funding to continue development of this community resource.