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The current draft of the Leptospira interrogans serovar Lai str. 56601 genome is 4.69 Million bp long.
The most recent genome sequence draft was released 04/25/2003 by the Chinese National HGC, Shanghai, but
there is no associated genome publication to date.
Taxonomy: Bacteria; Spirochaetes; Spirochaetales; Leptospiraceae; Leptospira.
Sequenced related species/strains: Borrelia afzelii PKo, Borrelia burgdorferi B31, Borrelia garinii PBi, Leptospira borgpetersenii serovar Hardjo-bovis JB197, Leptospira borgpetersenii serovar Hardjo-bovis L550, Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, Leptospira interrogans serovar Lai str. 56601, Treponema denticola ATCC 35405, Treponema pallidum subsp. pallidum str. Nichols
Sample position queries
A genome position can be specified by chromosomal coordinate range, COG
ID, or keywords from the GenBank or TIGR description of a gene.
The available chromosome/plasmid names are:
| Browser Chrom/Plasmid Name | Length (bp) | GC Content (%) | Gene Count | NCBI RefSeq Accession |
|---|
| chrI | 4332241 | 35.01 | 4360 | NC_004342 |
| chrII | 358943 | 35.14 | 367 | NC_004343 |
The following list shows examples of valid position queries for this
genome:
| Request: | Genome Browser Response: |
|---|
| chrI | Displays the entire sequence "chrI" in the browser window |
| chrI:1-10000 | Displays first ten thousand bases of the sequence "chrI" |
| transporter | Lists all genes with "transporter" in the name or description |
| LA0010 | Display genome at position of gene LA0010 |
Credits
The Archaeal Genome Browsers at UCSC were developed by members of the
Lowe Lab (Kevin Schneider,
Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support from
the UCSC Human Genome
Browser group.
The Archaeal Browsers are run by a slightly modified
version of the UCSC Human Genome
Browser system. All queries, bug reports, content corrections, suggested improvements,
and new track data submissions should be sent to Todd Lowe (lowe
@soe.ucsc.edu).
If you use the browser in your published research, please cite our
publication in the Nucleic Acids Research Database
Issue. Citations and positive feedback will help us obtain funding
to continue development of this community resource.
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