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  Clostridium difficile 630 (Clostridium difficile 630) Genome Browser Gateway
 
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  About the Clostridium difficile 630 09/20/2006 (closDiff_630) assembly (sequences)
 

Species Information

The Clostridium difficile 630 genome is 4.30 Million bp long and contains approximately 3982 predicted genes.

Taxonomy: Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.

Sequencing: The sequence was released 09/20/2006 by the Welcome Trust Sanger Institute, and was described in Nat Genet 38:779-86 (2006) Sebaihia M, Wren BW, Mullany P, Fairweather NF, Minton N, et al.."The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome."

Abstract: We determined the complete genome sequence of Clostridium difficile strain 630, a virulent and multidrug-resistant strain. Our analysis indicates that a large proportion (11%) of the genome consists of mobile genetic elements, mainly in the form of conjugative transposons. These mobile elements are putatively responsible for the acquisition by C. difficile of an extensive array of genes involved in antimicrobial resistance, virulence, host interaction and the production of surface... [Click above reference link for full abstract]

Isolation: Isolation publication not available

Sequenced related species/strains: Alkaliphilus metalliredigens QYMF, Alkaliphilus oremlandii OhILAs, Clostridium acetobutylicum ATCC 824, Clostridium beijerinckii NCIMB 8052, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A3 str. Loch Maree, Clostridium botulinum A str. ATCC 19397, Clostridium botulinum A str. Hall, Clostridium botulinum B1 str. Okra, Clostridium botulinum B str. Eklund 17B, Clostridium botulinum E3 str. Alaska E43, Clostridium botulinum F str. Langeland, Clostridium difficile QCD-32g58, Clostridium kluyveri DSM 555, Clostridium novyi NT, Clostridium perfringens str. 13, Clostridium perfringens ATCC 13124, Clostridium phytofermentans ISDg, Clostridium tetani E88, Clostridium thermocellum ATCC 27405

Browse Specific Gene/Feature Sets

Sample position queries

A genome position can be specified by chromosomal coordinate range, COG ID, or keywords from the GenBank or TIGR description of a gene. The available chromosome/plasmid names are:

Browser Chrom/Plasmid NameLength (bp)GC Content (%)Gene CountNCBI RefSeq Accession
plasmid_pCD630788127.9011NC_008226
chr429025229.063971NC_009089

The following list shows examples of valid position queries for this genome: 

Request:Genome Browser Response:
chrDisplays the entire sequence "chr" in the browser window
chr:1-10000    Displays first ten thousand bases of the sequence "chr"
transporter    Lists all genes with "transporter" in the name or description
CDP10Display genome at position of gene CDP10


Credits

The Archaeal Genome Browsers at UCSC were developed by members of the Lowe Lab (Kevin Schneider, Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support from the UCSC Human Genome Browser group. The Archaeal Browsers are run by a slightly modified version of the UCSC Human Genome Browser system. All queries, bug reports, content corrections, suggested improvements, and new track data submissions should be sent to Todd Lowe (lowe @soe.ucsc.edu).

If you use the browser in your published research, please cite our publication in the Nucleic Acids Research Database Issue. Citations and positive feedback will help us obtain funding to continue development of this community resource.