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Escherichia coli O157H7 EDL933 (Escherichia coli O157:H7 EDL933) Genome Browser Gateway
 
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About the Escherichia coli O157H7 EDL933 02/24/2001 (eschColi_O157H7_EDL93) assembly (sequences)
  The Escherichia coli O157:H7 EDL933 genome is 5.62 Million bp long and contains approximately 5554 predicted genes.

The sequence was released 02/24/2001 by the University of Wisconsin-Madison, USA, and was described in Nucleic Acids Res 26:4196-204 (1998) Burland V, Shao Y, Perna NT, Plunkett G, Sofia HJ, et al.  "The complete DNA sequence and analysis of the large virulence plasmid of Escherichia coli O157:H7. "
Abstract: The complete DNA sequence of pO157, the large virulence plasmid of EHEC strain O157:H7 EDL 933, is presented. The 92 kb F-like plasmid is composed of segments of putative virulence genes in a framework of replication and maintenance regions, with seven insertion sequence elements, located mostly at the boundaries of the virulence segments. One hundred open reading frames (ORFs) were identified, of which 19 were previously sequenced potential virulence genes. Forty-two ORFs were sufficiently similar to known proteins for suggested functions to be assigned, and 22 had no convincing similarity with any known proteins. Of the newly identified genes, an unusually large ORF of 3169 amino acids has a putative cytotoxin active site shared with the large clostridial toxin (LCT) family and proteins ... [Click above reference link for full abstract]

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.

Sequenced related species/strains: Candidatus Blochmannia floridanus, Buchnera aphidicola str. Bp (Baizongia pistaciae), Buchnera aphidicola str. Cc (Cinara cedri), Buchnera aphidicola str. Sg (Schizaphis graminum), Buchnera aphidicola str. APS (Acyrthosiphon pisum), Candidatus Blochmannia floridanus, Candidatus Blochmannia pennsylvanicus str. BPEN, Enterobacter sp. 638, Erwinia carotovora subsp. atroseptica SCRI1043, Escherichia coli 536, Escherichia coli APEC O1, Escherichia coli CFT073, Escherichia coli K12, Escherichia coli O157:H7 str. Sakai, Escherichia coli UTI89, Escherichia coli W3110, Photorhabdus luminescens subsp. laumondii TTO1, Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhi Ty2, Shigella boydii Sb227, Shigella dysenteriae Sd197, Shigella flexneri 2a str. 301, Shigella flexneri 2a str. 2457T, Shigella flexneri 5 str. 8401, Shigella sonnei Ss046, Sodalis glossinidius str. morsitans, Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis, Yersinia enterocolitica subsp. enterocolitica 8081, Yersinia pestis Antiqua, Yersinia pestis CO92, Yersinia pestis KIM, Yersinia pestis Nepal516, Yersinia pestis Pestoides F, Yersinia pestis biovar Microtus str. 91001, Yersinia pseudotuberculosis IP 32953

Sample position queries

A genome position can be specified by chromosomal coordinate range, COG ID, or keywords from the GenBank or TIGR description of a gene. The available chromosome/plasmid names are:

Browser Chrom/Plasmid NameLength (bp)GC Content (%)Gene CountNCBI RefSeq Accession
chr552844550.385453NC_002655
plasmid_pO1579207747.64101NC_007414

The following list shows examples of valid position queries for this genome: 

Request:Genome Browser Response:
chrDisplays the entire sequence "chr" in the browser window
chr:1-10000    Displays first ten thousand bases of the sequence "chr"
transporter    Lists all genes with "transporter" in the name or description
Z0010Display genome at position of gene Z0010


Credits

The Archaeal Genome Browsers at UCSC were developed by members of the Lowe Lab (Kevin Schneider, Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support from the UCSC Human Genome Browser group. The Archaeal Browsers are run by a slightly modified version of the UCSC Human Genome Browser system. All queries, bug reports, content corrections, suggested improvements, and new track data submissions should be sent to Todd Lowe (lowe @soe.ucsc.edu).

If you use the browser in your published research, please cite our publication in the Nucleic Acids Research Database Issue. Citations and positive feedback will help us obtain funding to continue development of this community resource.