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The Gloeobacter violaceus PCC 7421 genome is 4.66 Million bp long and contains approximately 4482
predicted genes.
The sequence was released 11/19/2003 by the Kazusa, and was described
in DNA Res :137-45 (2003) Nakamura Y, Kaneko T, Sato S, Mimuro M, Miyashita H, et al. "Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids.
"
Abstract: The nucleotide sequence of the entire genome of a cyanobacterium Gloeobacter violaceus PCC 7421 was determined. The genome of G. violaceus was a single circular chromosome 4,659,019 bp long with an average GC content of 62%. No plasmid was detected. The chromosome comprises 4430 potential protein-encoding genes, one set of rRNA genes, 45 tRNA genes representing 44 tRNA species and genes for tmRNA, B subunit of RNase P, SRP RNA and 6Sa RNA. Forty-one percent of the potential... [Click above reference link for full abstract]
Taxonomy: Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.
Sequenced related species/strains: None
Sample position queries
A genome position can be specified by chromosomal coordinate range, COG
ID, or keywords from the GenBank or TIGR description of a gene.
The available chromosome/plasmid names are:
| Browser Chrom/Plasmid Name | Length (bp) | GC Content (%) | Gene Count | NCBI RefSeq Accession |
|---|
| chr | 4659019 | 62.00 | 4482 | NC_005125 |
The following list shows examples of valid position queries for this
genome:
| Request: | Genome Browser Response: |
|---|
| chr | Displays the entire sequence "chr" in the browser window |
| chr:1-10000 | Displays first ten thousand bases of the sequence "chr" |
| transporter | Lists all genes with "transporter" in the name or description |
| glr0010 | Display genome at position of gene glr0010 |
Credits
The Archaeal Genome Browsers at UCSC were developed by members of the
Lowe Lab (Kevin Schneider,
Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support from
the UCSC Human Genome
Browser group.
The Archaeal Browsers are run by a slightly modified
version of the UCSC Human Genome
Browser system. All queries, bug reports, content corrections, suggested improvements,
and new track data submissions should be sent to Todd Lowe (lowe
@soe.ucsc.edu).
If you use the browser in your published research, please cite our
publication in the Nucleic Acids Research Database
Issue. Citations and positive feedback will help us obtain funding
to continue development of this community resource.
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