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The Staphylococcus aureus subsp. aureus Mu50 genome is 2.90 Million bp long and contains approximately 2809
predicted genes.
The sequence was released 06/22/2001 by the Juntendo Univ., and was described
in Lancet :1225-40 (2001) Kuroda M, Ohta T, Uchiyama I, Baba T, Yuzawa H, et al. "Whole genome sequencing of meticillin-resistant Staphylococcus aureus.
"
Abstract: BACKGROUND: Staphylococcus aureus is one of the major causes of community-acquired and hospital-acquired infections. It produces numerous toxins including superantigens that cause unique disease entities such as toxic-shock syndrome and staphylococcal scarlet fever, and has acquired resistance to practically all antibiotics. Whole genome analysis is a necessary step towards future development of countermeasures against this organism. METHODS: Whole genome sequences of two related S... [Click above reference link for full abstract]
Taxonomy: Bacteria; Firmicutes; Bacillales; Staphylococcus.
Sequenced related species/strains: Aster yellows witches'-broom phytoplasma AYWB, Bacillus anthracis str. A2012, Bacillus anthracis str. Ames, Bacillus anthracis str. 'Ames Ancestor', Bacillus anthracis str. Sterne, Bacillus cereus ATCC 14579, Bacillus cereus ATCC 10987, Bacillus cereus E33L, Bacillus clausii KSM-K16, Bacillus halodurans C-125, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus subtilis subsp. subtilis str. 168, Bacillus thuringiensis str. Al Hakam, Bacillus thuringiensis serovar konkukian str. 97-27, Caldicellulosiruptor saccharolyticus DSM 8903, Carboxydothermus hydrogenoformans Z-2901, Clostridium acetobutylicum ATCC 824, Clostridium botulinum A str. ATCC 3502, Clostridium difficile 630, Clostridium difficile QCD-32g58, Clostridium novyi NT, Clostridium perfringens str. 13, Clostridium perfringens ATCC 13124, Clostridium tetani E88, Clostridium thermocellum ATCC 27405, Desulfitobacterium hafniense Y51, Desulfotomaculum reducens MI-1, Enterococcus faecalis V583, Geobacillus kaustophilus HTA426, Geobacillus thermodenitrificans NG80-2, Lactobacillus acidophilus NCFM, Lactobacillus brevis ATCC 367, Lactobacillus casei ATCC 334, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, Lactobacillus gasseri ATCC 33323, Lactobacillus johnsonii NCC 533, Lactococcus lactis subsp. lactis Il1403, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris SK11, Lactobacillus plantarum WCFS1, Lactobacillus reuteri F275, Lactobacillus sakei subsp. sakei 23K, Lactobacillus salivarius subsp. salivarius UCC118, Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, Listeria innocua Clip11262, Listeria monocytogenes EGD-e, Listeria monocytogenes str. 4b F2365, Listeria welshimeri serovar 6b str. SLCC5334, Mesoplasma florum L1, Moorella thermoacetica ATCC 39073, Mycoplasma agalactiae PG2, Mycoplasma capricolum subsp. capricolum ATCC 27343, Mycoplasma gallisepticum R, Mycoplasma genitalium G37, Mycoplasma hyopneumoniae 232, Mycoplasma hyopneumoniae 7448, Mycoplasma hyopneumoniae J, Mycoplasma mobile 163K, Mycoplasma mycoides subsp. mycoides SC str. PG1, Mycoplasma penetrans HF-2, Mycoplasma pneumoniae M129, Mycoplasma pulmonis UAB CTIP, Mycoplasma synoviae 53, Oceanobacillus iheyensis HTE831, Oenococcus oeni PSU-1, Onion yellows phytoplasma OY-M, Pediococcus pentosaceus ATCC 25745, Pelotomaculum thermopropionicum SI, Staphylococcus aureus subsp. aureus COL, Staphylococcus aureus subsp. aureus JH9, Staphylococcus aureus subsp. aureus MW2, Staphylococcus aureus subsp. aureus N315, Staphylococcus aureus subsp. aureus NCTC 8325, Staphylococcus aureus RF122, Staphylococcus aureus subsp. aureus USA300, Staphylococcus aureus subsp. aureus MRSA252, Staphylococcus aureus subsp. aureus MSSA476, Staphylococcus epidermidis ATCC 12228, Staphylococcus epidermidis RP62A, Staphylococcus haemolyticus JCSC1435, Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305, Streptococcus agalactiae 2603V-R, Streptococcus agalactiae A909, Streptococcus agalactiae NEM316, Streptococcus mutans UA159, Streptococcus pneumoniae D39, Streptococcus pneumoniae R6, Streptococcus pneumoniae TIGR4, Streptococcus pyogenes M1 GAS, Streptococcus pyogenes MGAS10270, Streptococcus pyogenes MGAS10394, Streptococcus pyogenes MGAS10750, Streptococcus pyogenes MGAS2096, Streptococcus pyogenes MGAS315, Streptococcus pyogenes MGAS5005, Streptococcus pyogenes MGAS6180, Streptococcus pyogenes MGAS8232, Streptococcus pyogenes MGAS9429, Streptococcus pyogenes str. Manfredo, Streptococcus pyogenes SSI-1, Streptococcus sanguinis SK36, Streptococcus suis 05ZYH33, Streptococcus suis 98HAH33, Streptococcus thermophilus CNRZ1066, Streptococcus thermophilus LMD-9, Streptococcus thermophilus LMG 18311, Symbiobacterium thermophilum IAM 14863, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Thermoanaerobacter tengcongensis MB4, Ureaplasma parvum serovar 3 str. ATCC 700970
Sample position queries
A genome position can be specified by chromosomal coordinate range, COG
ID, or keywords from the GenBank or TIGR description of a gene.
The available chromosome/plasmid names are:
The following list shows examples of valid position queries for this
genome:
| Request: | Genome Browser Response: |
|---|
| chr | Displays the entire sequence "chr" in the browser window |
| chr:1-10000 | Displays first ten thousand bases of the sequence "chr" |
| transporter | Lists all genes with "transporter" in the name or description |
| SAV0010 | Display genome at position of gene SAV0010 |
Credits
The Archaeal Genome Browsers at UCSC were developed by members of the
Lowe Lab (Kevin Schneider,
Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support from
the UCSC Human Genome
Browser group.
The Archaeal Browsers are run by a slightly modified
version of the UCSC Human Genome
Browser system. All queries, bug reports, content corrections, suggested improvements,
and new track data submissions should be sent to Todd Lowe (lowe
@soe.ucsc.edu).
If you use the browser in your published research, please cite our
publication in the Nucleic Acids Research Database
Issue. Citations and positive feedback will help us obtain funding
to continue development of this community resource.
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