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Vibrio cholerae MO10 (Vibrio cholerae MO10) Genome Browser Gateway
 
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About the Vibrio cholerae MO10 09/17/2005 (vibrChol_MO10_1) assembly (sequences)
 

Species Information

The Vibrio cholerae MO10 genome is 4.02 Million bp long and contains approximately 3418 predicted genes.

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.

The most recent genome sequence draft was released 09/17/2005 by the TIGR, but there is no associated genome publication to date.

Isolation: Publication not available

Sequenced related species/strains: Aliivibrio salmonicida LFI1238, Photobacterium profundum SS9, Vibrio sp. Ex25, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae M66-2, Vibrio cholerae MJ-1236, Vibrio cholerae O395, Vibrio fischeri ES114, Vibrio fischeri MJ11, Vibrio harveyi ATCC BAA-1116, Vibrio parahaemolyticus RIMD 2210633, Vibrio splendidus LGP32, Vibrio vulnificus CMCP6, Vibrio vulnificus YJ016

Browse Specific Gene/Feature Sets

Sample position queries

A genome position can be specified by chromosomal coordinate range, COGID, or keywords from the GenBank or TIGR description of a gene. The available chromosome/plasmid names are:

Browser Chrom/Plasmid NameLength (bp)GC Content (%)Gene CountNCBI RefSeq Accession
VchoM_01_16493245.492NZ_AAKF01000164
VchoM_01_821011749.0710NZ_AAKF01000082
VchoM_01_153106551.831NZ_AAKF01000153
VchoM_01_104386546.163NZ_AAKF01000104
VchoM_01_146125347.962NZ_AAKF01000146
VchoM_01_97516442.804NZ_AAKF01000097
VchoM_01_741384749.1314NZ_AAKF01000074
VchoM_01_215993147.4449NZ_AAKF01000021
VchoM_01_134159849.000NZ_AAKF01000134
VchoM_01_781150251.588NZ_AAKF01000078
VchoM_01_681682346.2911NZ_AAKF01000068
VchoM_01_128525547.7470NZ_AAKF01000012
VchoM_01_114255947.133NZ_AAKF01000114
VchoM_01_123217848.813NZ_AAKF01000123
VchoM_01_150112252.940NZ_AAKF01000150
VchoM_01_512593247.6327NZ_AAKF01000051
VchoM_01_136150245.814NZ_AAKF01000136
VchoM_01_143127744.793NZ_AAKF01000143
VchoM_01_791119046.5711NZ_AAKF01000079
VchoM_01_102406747.486NZ_AAKF01000102
VchoM_01_196156841.7939NZ_AAKF01000019
VchoM_01_313073348.05108NZ_AAKF01000003
VchoM_01_147122448.5660NZ_AAKF01000014
VchoM_01_16988648.191NZ_AAKF01000169
VchoM_01_157098446.6459NZ_AAKF01000015
VchoM_01_17336648.091NZ_AAKF01000173
VchoM_01_99767047.1475NZ_AAKF01000009
VchoM_01_811024548.3111NZ_AAKF01000081
VchoM_01_115254244.532NZ_AAKF01000115
VchoM_01_101423546.873NZ_AAKF01000101
VchoM_01_482798248.7919NZ_AAKF01000048
VchoM_01_138147348.742NZ_AAKF01000138
VchoM_01_602060347.2913NZ_AAKF01000060
VchoM_01_154105749.292NZ_AAKF01000154
VchoM_01_88663445.168NZ_AAKF01000088
VchoM_01_17528313.780NZ_AAKF01000175
VchoM_01_121226146.842NZ_AAKF01000121
VchoM_01_159101252.960NZ_AAKF01000159
VchoM_01_141139849.001NZ_AAKF01000141
VchoM_01_17084147.091NZ_AAKF01000170
VchoM_01_462912746.7424NZ_AAKF01000046
VchoM_01_151111349.062NZ_AAKF01000151
VchoM_01_16888950.172NZ_AAKF01000168
VchoM_01_761264144.588NZ_AAKF01000076
VchoM_01_592061750.0324NZ_AAKF01000059
VchoM_01_17248926.790NZ_AAKF01000172
VchoM_01_552267347.6616NZ_AAKF01000055
VchoM_01_93543448.203NZ_AAKF01000093
VchoM_01_651821848.6810NZ_AAKF01000065
VchoM_01_16692545.733NZ_AAKF01000166
VchoM_01_103396749.561NZ_AAKF01000103
VchoM_01_413652748.5229NZ_AAKF01000041
VchoM_01_661814348.9516NZ_AAKF01000066
VchoM_01_106382142.455NZ_AAKF01000106
VchoM_01_235589947.8153NZ_AAKF01000023
VchoM_01_105382647.104NZ_AAKF01000105
VchoM_01_711546148.8512NZ_AAKF01000071
VchoM_01_413004647.32108NZ_AAKF01000004
VchoM_01_86713948.866NZ_AAKF01000086
VchoM_01_110327547.912NZ_AAKF01000110
VchoM_01_641846050.9413NZ_AAKF01000064
VchoM_01_147123346.231NZ_AAKF01000147
VchoM_01_155103948.222NZ_AAKF01000155
VchoM_01_443421248.5633NZ_AAKF01000044
VchoM_01_129170149.740NZ_AAKF01000129
VchoM_01_582171947.1617NZ_AAKF01000058
VchoM_01_122224047.905NZ_AAKF01000122
VchoM_01_771256347.7011NZ_AAKF01000077
VchoM_01_502668246.4025NZ_AAKF01000050
VchoM_01_611253547.51105NZ_AAKF01000006
VchoM_01_85762947.375NZ_AAKF01000085
VchoM_01_119563247.2670NZ_AAKF01000011
VchoM_01_532497048.1522NZ_AAKF01000053
VchoM_01_285011948.3946NZ_AAKF01000028
VchoM_01_721538544.738NZ_AAKF01000072
VchoM_01_354234548.1940NZ_AAKF01000035
VchoM_01_16593059.681NZ_AAKF01000165
VchoM_01_117241146.086NZ_AAKF01000117
VchoM_01_137653346.5659NZ_AAKF01000013
VchoM_01_139145847.532NZ_AAKF01000139
VchoM_01_127181840.922NZ_AAKF01000127
VchoM_01_810884146.3384NZ_AAKF01000008
VchoM_01_100463947.426NZ_AAKF01000100
VchoM_01_384004848.5736NZ_AAKF01000038
VchoM_01_144126644.082NZ_AAKF01000144
VchoM_01_152107346.322NZ_AAKF01000152
VchoM_01_314572750.1145NZ_AAKF01000031
VchoM_01_84826148.668NZ_AAKF01000084
VchoM_01_16394348.252NZ_AAKF01000163
VchoM_01_87708449.206NZ_AAKF01000087
VchoM_01_671748848.8014NZ_AAKF01000067
VchoM_01_731494150.6810NZ_AAKF01000073
VchoM_01_701614547.6916NZ_AAKF01000070
VchoM_01_113257746.375NZ_AAKF01000113
VchoM_01_120228546.043NZ_AAKF01000120
VchoM_01_116245045.223NZ_AAKF01000116
VchoM_01_119235745.233NZ_AAKF01000119
VchoM_01_631930648.3716NZ_AAKF01000063
VchoM_01_572176746.3820NZ_AAKF01000057
VchoM_01_542374948.5323NZ_AAKF01000054
VchoM_01_89634348.386NZ_AAKF01000089
VchoM_01_472802149.5528NZ_AAKF01000047
VchoM_01_492707249.4826NZ_AAKF01000049
VchoM_01_611950447.9411NZ_AAKF01000061
VchoM_01_16297043.712NZ_AAKF01000162
VchoM_01_128172947.193NZ_AAKF01000128
VchoM_01_131167648.212NZ_AAKF01000131
VchoM_01_453306449.1730NZ_AAKF01000045
VchoM_01_98501847.974NZ_AAKF01000098
VchoM_01_96525948.035NZ_AAKF01000096
VchoM_01_304921743.1333NZ_AAKF01000030
VchoM_01_148117838.791NZ_AAKF01000148
VchoM_01_334431945.6930NZ_AAKF01000033
VchoM_01_132163851.710NZ_AAKF01000132
VchoM_01_265497347.6052NZ_AAKF01000026
VchoM_01_16792145.492NZ_AAKF01000167
VchoM_01_166784150.1259NZ_AAKF01000016
VchoM_01_344399546.6734NZ_AAKF01000034
VchoM_01_156103348.022NZ_AAKF01000156
VchoM_01_125193545.743NZ_AAKF01000125
VchoM_01_214962647.97116NZ_AAKF01000002
VchoM_01_374074048.5737NZ_AAKF01000037
VchoM_01_94542344.836NZ_AAKF01000094
VchoM_01_124194544.163NZ_AAKF01000124
VchoM_01_158101444.671NZ_AAKF01000158
VchoM_01_255579245.2950NZ_AAKF01000025
VchoM_01_433456348.4729NZ_AAKF01000043
VchoM_01_205997747.2748NZ_AAKF01000020
VchoM_01_691648747.3219NZ_AAKF01000069
VchoM_01_225984749.1263NZ_AAKF01000022
VchoM_01_245584347.9635NZ_AAKF01000024
VchoM_01_511626447.06106NZ_AAKF01000005
VchoM_01_137149647.263NZ_AAKF01000137
VchoM_01_111307942.684NZ_AAKF01000111
VchoM_01_133160847.143NZ_AAKF01000133
VchoM_01_142138549.100NZ_AAKF01000142
VchoM_01_17158829.080NZ_AAKF01000171
VchoM_01_126181945.462NZ_AAKF01000126
VchoM_01_157102445.511NZ_AAKF01000157
VchoM_01_324552648.4241NZ_AAKF01000032
VchoM_01_751277547.438NZ_AAKF01000075
VchoM_01_90593950.773NZ_AAKF01000090
VchoM_01_621939548.4117NZ_AAKF01000062
VchoM_01_275207849.4150NZ_AAKF01000027
VchoM_01_135155248.263NZ_AAKF01000135
VchoM_01_186456549.8063NZ_AAKF01000018
VchoM_01_130168843.603NZ_AAKF01000130
VchoM_01_364174647.8232NZ_AAKF01000036
VchoM_01_109341650.264NZ_AAKF01000109
VchoM_01_118236750.493NZ_AAKF01000118
VchoM_01_109696248.2783NZ_AAKF01000010
VchoM_01_16199759.981NZ_AAKF01000161
VchoM_01_92559345.615NZ_AAKF01000092
VchoM_01_522516849.5025NZ_AAKF01000052
VchoM_01_403812948.8737NZ_AAKF01000040
VchoM_01_393921349.9632NZ_AAKF01000039
VchoM_01_145126248.421NZ_AAKF01000145
VchoM_01_562235449.1116NZ_AAKF01000056
VchoM_01_95533143.884NZ_AAKF01000095
VchoM_01_140141645.901NZ_AAKF01000140
VchoM_01_17434344.611NZ_AAKF01000174
VchoM_01_112300747.494NZ_AAKF01000112
VchoM_01_149114443.182NZ_AAKF01000149
VchoM_01_176680545.1649NZ_AAKF01000017
VchoM_01_91568450.424NZ_AAKF01000091
VchoM_01_107370751.074NZ_AAKF01000107
VchoM_01_801062848.1112NZ_AAKF01000080
VchoM_01_711065948.34102NZ_AAKF01000007
VchoM_01_83926846.8410NZ_AAKF01000083
VchoM_01_116865845.13125NZ_AAKF01000001
VchoM_01_99489347.274NZ_AAKF01000099
VchoM_01_16099954.152NZ_AAKF01000160
VchoM_01_294941949.5535NZ_AAKF01000029
VchoM_01_108353147.494NZ_AAKF01000108
VchoM_01_423587647.3626NZ_AAKF01000042

The following list shows examples of valid position queries for thisgenome: 

Request:Genome Browser Response:
VchoM_01_1Displays the entire sequence "VchoM_01_1" in the browser window
VchoM_01_1:1-10000    Displays first ten thousand bases of the sequence "VchoM_01_1"
transporter    Lists all genes with "transporter" in the name or description
VchoM_01003201Display genome at position of gene VchoM_01003201


Credits

The Archaeal Genome Browsers at UCSC were developed by members of theLowe Lab (Kevin Schneider,Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support fromthe UCSC Human GenomeBrowser group.The Archaeal Browsers are run by a slightly modifiedversion of the UCSC Human GenomeBrowser system. All queries, bug reports, content corrections, suggested improvements,and new track data submissions should be sent to Todd Lowe (lowe@soe.ucsc.edu).

If you use the browser in your published research, please cite ourpublication in the Nucleic Acids Research DatabaseIssue. Citations and positive feedback will help us obtain fundingto continue development of this community resource.