Shewanella ANA-3 (Shewanella sp. ANA-3) Genome Browser Gateway

Shewanella ANA-3 (Shewanella sp. ANA-3) Genome Browser Gateway

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clade	genome	assembly	position or search term	image width

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About the Shewanella ANA-3 11/08/2006 (shewANA3) assembly (sequences)

The current draft of the Shewanella sp. ANA-3 genome is 5.25 Million bp long.

The most recent genome sequence draft was released 11/08/2006 by the DOE Joint Genome Institute, but there is no associated genome publication to date.

Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.

Sequenced related species/strains: Colwellia psychrerythraea 34H, Idiomarina loihiensis L2TR, Marinobacter aquaeolei VT8, Pseudoalteromonas atlantica T6c, Pseudoalteromonas haloplanktis TAC125, Psychromonas ingrahamii 37, Saccharophagus degradans 2-40, Shewanella sp. MR-4, Shewanella sp. MR-7, Shewanella sp. W3-18-1, Shewanella amazonensis SB2B, Shewanella baltica OS155, Shewanella denitrificans OS217, Shewanella frigidimarina NCIMB 400, Shewanella loihica PV-4, Shewanella oneidensis MR-1, Shewanella putrefaciens CN-32

Sample position queries

A genome position can be specified by chromosomal coordinate range, COG ID, or keywords from the GenBank or TIGR description of a gene. The available chromosome/plasmid names are:

Browser Chrom/Plasmid Name Length (bp) GC Content (%) Gene Count NCBI RefSeq Accession

plasmid_1 278942 45.67 251 NC_008573

chr1 4972204 48.05 4267 NC_008577

The following list shows examples of valid position queries for this genome:

Request: Genome Browser Response:

chr1 Displays the entire sequence "chr1" in the browser window

chr1:1-10000 Displays first ten thousand bases of the sequence "chr1"

transporter Lists all genes with "transporter" in the name or description

Shewana3_4148 Display genome at position of gene Shewana3_4148

Credits

The Archaeal Genome Browsers at UCSC were developed by members of the Lowe Lab (Kevin Schneider, Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support from the UCSC Human Genome Browser group. The Archaeal Browsers are run by a slightly modified version of the UCSC Human Genome Browser system. All queries, bug reports, content corrections, suggested improvements, and new track data submissions should be sent to Todd Lowe (lowe @soe.ucsc.edu).

If you use the browser in your published research, please cite our publication in the Nucleic Acids Research Database Issue. Citations and positive feedback will help us obtain funding to continue development of this community resource.