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The Shewanella oneidensis MR-1 genome is 5.13 Million bp long and contains approximately 4745
predicted genes.
The sequence was released 10/09/2002 by the TIGR, and was described
in Nat Biotechnol :1118-23 (2002) Heidelberg JF, Paulsen IT, Nelson KE, Gaidos EJ, Nelson WC, et al. "Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis.
"
Abstract: Shewanella oneidensis is an important model organism for bioremediation studies because of its diverse respiratory capabilities, conferred in part by multicomponent, branched electron transport systems. Here we report the sequencing of the S. oneidensis genome, which consists of a 4,969,803-base pair circular chromosome with 4,758 predicted protein-encoding open reading frames (CDS) and a 161,613-base pair plasmid with 173 CDSs. We identified the first Shewanella lambda-like phage,... [Click above reference link for full abstract]
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.
Sequenced related species/strains: Colwellia psychrerythraea 34H, Idiomarina loihiensis L2TR, Marinobacter aquaeolei VT8, Pseudoalteromonas atlantica T6c, Pseudoalteromonas haloplanktis TAC125, Psychromonas ingrahamii 37, Saccharophagus degradans 2-40, Shewanella sp. ANA-3, Shewanella sp. MR-4, Shewanella sp. MR-7, Shewanella sp. W3-18-1, Shewanella amazonensis SB2B, Shewanella baltica OS155, Shewanella denitrificans OS217, Shewanella frigidimarina NCIMB 400, Shewanella loihica PV-4, Shewanella putrefaciens CN-32
Sample position queries
A genome position can be specified by chromosomal coordinate range, COG
ID, or keywords from the GenBank or TIGR description of a gene.
The available chromosome/plasmid names are:
The following list shows examples of valid position queries for this
genome:
| Request: | Genome Browser Response: |
|---|
| chr | Displays the entire sequence "chr" in the browser window |
| chr:1-10000 | Displays first ten thousand bases of the sequence "chr" |
| transporter | Lists all genes with "transporter" in the name or description |
| SO_0010 | Display genome at position of gene SO_0010 |
Credits
The Archaeal Genome Browsers at UCSC were developed by members of the
Lowe Lab (Kevin Schneider,
Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support from
the UCSC Human Genome
Browser group.
The Archaeal Browsers are run by a slightly modified
version of the UCSC Human Genome
Browser system. All queries, bug reports, content corrections, suggested improvements,
and new track data submissions should be sent to Todd Lowe (lowe
@soe.ucsc.edu).
If you use the browser in your published research, please cite our
publication in the Nucleic Acids Research Database
Issue. Citations and positive feedback will help us obtain funding
to continue development of this community resource.
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